Standard Technical Framework
| Core Elements | J101 Event | J163 Event | KK179 Event |
| Limit of Detection (LOD95%) | 3.6 copies | 4.2 copies | 7.0 copies |
| Feature Sequence | CQ857611/CQ857609 | JA141099/JA141097 | JA901749 |
| Cq mean (15 copies/μl) | 31.7 | 31.2 | 34.8 |
Key technologies for DNA extraction
The modified CTAB method is used as the standard, and the key steps include:
- Add 2% PVPP to remove polyphenol inhibitors
- Lyze at 65℃ for 90 minutes with Proteinase K digestion
- Precipitate non-DNA components with potassium acetate at -20℃
- Selectively precipitate DNA with CTAB buffer
- Dissolve DNA in 0.1X TE buffer preheated at 70℃
Validation data: Eleven inter-laboratory tests showed that the Cq value of the acc1 gene of the extracted DNA ranged from 16.9 to 23.0, meeting the quality requirement of ΔCq≤1.
Real-time fluorescence PCR system
| Components | J101 system | J163 system | KK179 system |
| Primer concentration | 400nM | 400nM | 500nM |
| Probe labeling | FAM-BHQ1 | FAM-BHQ1 | FAM-ZEN-IowaBFQ |
| Amplification efficiency | 95.8-106.3% | 96.4-118.0% | 78.1-103.5% |
Temperature program: initial denaturation at 95℃ for 3 min; 45 cycles (95℃ for 15 s, 60℃ for 60 s).
Method validation data
Validation by 11 European laboratories showed:
- Specificity: No cross-reaction to 12 non-target GM crops such as MON810
- Sensitivity: GM ingredients with a mass fraction of 0.1% can be stably detected
- Robustness: The Cq value difference between different equipment such as ABI7500/CFX96 is <3 cycles
Implementation recommendations
- Quality control requirements: Each batch must include a blank control, a positive control (containing the acc1 gene) and an inhibition control (1:4 diluted sample)
- Equipment calibration: It is recommended to use digital PCR to quantify the copy number of the standard
- Anti-pollution measures: Aerosol protection tips must be used, and the experiment must distinguish between the DNA extraction area and the PCR amplification area
- Data interpretation: The S-type amplification curve and Cq value ≤ 40 must be met at the same time